prof. RNDr. Zdeněk Hubálek DrSc.

Pozice vědecký pracovník kmenový
Zaměření eko-epidemiologie mikrobiálních nákaz

+420 519 352 961

Výzkumné směry

  • ekologie zoonotických patogenů a jejich obratlovčích hostitelů.

Ukončené projekty

VectorNet: Evropská síť sdílející data o geografické distribuci vektorů, přenašečů patogenů člověka a zvířat (2014–2017)
EDENext: Biologie a kontrola infekcí přenášených vektory v Evropě (2011–2015)
EuroWestNile (European West Nile Collaborative Project) (2011–2014)
VBORNET (European Network for Arthropod Vector Surveillance for Human Public Health) (2010–2014)
Emerging diseases in a changing European environment (2004–2009)
(Re)emergentní virové nákazy přenosné komáry (2006–2008)
Intengrated consortium on ticks and tick-borne diseases (2004–2008)

Publikace a aplikované výstupy

2025

Nowotny N, Mandola ML, Monne I, Bagó Z, Nogarol C, Fusaro A, Dimmel K, Moroni B, Guardone L, Kolodziejek J, Palumbo E, Stanclova G, Steinrigl A, Fidler G, Bertasio C, Bertoletti I, Bianchi A, Calzolari M, Prati P, Vicari N, Salomoni A, Priore MF, Gobbo F, Garcia-Vozmediano A, Loney T, Abou Tayoun A, Alsheikh-Ali A, De Benedictis P, Camp JV, Hubálek Z, Rudolf I, Lelli D, Moreno A (2025). Neurotropic tick-borne flavivirus in Alpine chamois (Rupicapra rupicapra rupicapra), Austria, 2017, Italy, 2023. Viruses, 122.
Rudolf I, Kejíková R, Kosoy M, Hubálek Z, Mravcová K, Šikutová S, Whatmore AM, Al Dahouk S (2025). Brucella microti and rodent-borne brucellosis: a neglected public health threat.. Zoonoses and Public Health.

2024

Mravcová K, Zadražilová S, Vlčková I, Orlíková H, Malý M, Kynčl J, Mendel J, Hubálek Z, Šikutová S, Rudolf I (2024). Výskyt Francisella tularensis subsp. holarctica v hematofágních členovcích na Břeclavsku v roce 2022. Epidemiologie, Mikrobiologie, Imunologie, 73: 147-152.
Šikutová S, Mendel J, Mravcová K, Kejíková R, Hubálek Z, Kampen H, Rudolf I (2024). Detection of Usutu virus in a house martin bug Oeciacus hirundinis (Hemiptera: Cimicidae): implications for virus overwintering in a temperate zone. Parasitology Research, 304.

2023

Hubálek Z, Křivanová A, Nesvadbová J, Rudolf I (2023). Zoonotic potential of Brucella microti. Vector-Borne and Zoonotic Diseases.
Mravcová K, Camp JV, Hubálek Z, Šikutová S, Vaux AGC, Medlock JM, Rudolf I (2023). Ťahyňa virus—A widespread, but neglected mosquito-borne virus in Europe. Zoonoses and Public Health.
Saegerman C, Humblet M, Leandri M, Gonzalez G, Heyman P, Sprong H, L'Hostis M, Moutailler S, Bonnet S, Haddad N, Boulanger N, Leib S, Hoch T, Thiry E, Bournez L, Kerlik J, Velay A, Jore S, Jourdain E, Gilot-Fromont E, Brugger K, Geller J, Studahl M, Knap N, Avšič-Županc T, Růžek D, Zomer T, Bødker R, Berger T, Martin-Latil S, De Regge N, Raffetin A, Lacour S, Klein M, Lernout T, Quillery E, Hubálek Z, Ruiz-Fons F, Estrada-Peña A, Fravalo P, Kooh P, Etore F, Gossner C, Purse B (2023). First Expert Elicitation of Knowledge on Possible Drivers of Observed Increasing Human Cases of Tick-Borne Encephalitis in Europe. Viruses, 791.
Sychra J, Horal D, Forejtek P, Hubálek Z (2023). Zimní nocoviště havranů polních (Corvus frugilegus) a kavek obecných (Coloeus monedula) v oblasti Knížecího lesa u Židlochovic na přelomu tisíciletí. Crex - Zpravodaj Jihomoravské pobočky ČSO, 40: 86-111.

2022

Šikutová S, Mendel J, Vojtíšek J, Hubálek Z, Rudolf I (2022). First record of mosquito-borne Sindbis virus (genotype I) in the Czech Republic. Acta virologica.
Vojtíšek J, Pečta R, Kejíková R, Hubálek Z, Šikutová S, Rudolf I (2022). Usutu virus, další emergentní patogen přenášený komáry ve střední Evropě. Military Medical Science Letters.

2021

de Heus P, Kolodziejek J, Hubálek Z, Dimmel K, Racher V, Nowotny N, Cavalleri JV (2021). West nile virus and tick-borne encephalitis virus are endemic in equids in Eastern Austria. Viruses, 1873.
Eyer L, Svoboda P, Balvan J, Vicar T, Raudenská M, Štefánik M, Haviernik J, Huvarová I, Straková P, Rudolf I, Hubálek Z, Seley-Radtke K, De Clercq E, Růžek D (2021). Broad-spectrum antiviral activity of 3′-deoxy-3′-fluoroadenosine against emerging flaviviruses. Antimicrobial Agents and Chemotherapy, e01522-20.
Hubálek Z (2021). History of arbovirus research in the Czech Republic. Viruses, 2334.
Hubálek Z (2021). Effect of environmental variables on incidence of tick-borne encephalitis, leptospirosis and tularaemia. Central European Journal of Public Health.
Hubálek Z (2021). Pathogenic microorganisms associated with gulls and terns (Laridae). Journal of Vertebrate Biology, 21009.
Rudolf I, Kejíková R, Vojtíšek J, Mendel J, Peňázziová K, Hubálek Z, Šikutová S, Estrada-Peňa A (2021). Probable overwintering of adult Hyalomma rufipes in Central Europe. Ticks and Tick-borne Diseases, 101718.

2020

de Heus P, Kolodziejek J, Camp JV, Dimmel K, Bago Z, Hubálek Z, van den Hoven R, Cavalleri JV, Nowotny N (2020). Emergence of West Nile virus lineage 2 in Europe: Characteristics of the first seven cases of West Nile neuroinvasive disease in horses in Austria. Transboundary and Emerging Diseases.
Hubálek Z, Sedláček P, Estrada-Peña A, Vojtíšek J, Rudolf I (2020). First record of Hyalomma rufipes in the Czech Republic, with a review of relevant cases in other parts of Europe. Ticks and Tick-borne Diseases, 101421.
Rudolf I, Blažejová H, Mendel J, Straková P, Šebesta O, Rettich F, Čabanová V, Miterpáková M, Betášová L, Peško J, Barbušinová E, McKee C, Osikowicz L, Šikutová S, Hubálek Z, Kosoy M (2020). Bartonella species in medically important mosquitoes, Central Europe. Parasitology Research.
Šikutová S, Dočkal P, Straková P, Mendel J, Šebesta O, Betášová L, Blažejová H, Hubálek Z, Rudolf I (2020). First record of mosquito-borne Kyzylagach virus in Central Europe. Viruses, 1445.

2019

Čabanová V, Šikutová S, Straková P, Šebesta O, Vichová B, Zubríková D, Miterpáková M, Mendel J, Hurníková Z, Hubálek Z, Rudolf I (2019). Co-circulation of West Nile and Usutu flaviviruses in mosquitoes in Slovakia, 2018. Viruses, 639.
Eyer L, Fojtiková M, Nencka R, Rudolf I, Hubálek Z, Růžek D (2019). Viral RNA-Dependent RNA Polymerase Inhibitor 7-Deaza-2 '-C-Methyladenosine Prevents Death in a Mouse Model of West Nile Virus Infection. Antimicrobial Agents and Chemotherapy, e02093-18.
Hönig V, Palus M, Kašpar T, Zemanová M, Majerová K, Hofmannová L, Papezik P, Šikutová S, Rettich F, Hubálek Z, Rudolf I, Votýpka J, Modrý D, Růžek D (2019). Multiple Lineages of Usutu Virus (Flaviviridae, Flavivirus) in Blackbirds (Turdus merula) and Mosquitoes (Culex pipiens, Cx. modestus) in the Czech Republic (2016-2019). Microorganisms, 568.
Hubálek Z, Tomešek M, Kosina M, Šikutová S, Straková P, Rudolf I (2019). West Nile virus outbreak in captive and wild raptors, Czech Republic, 2018. Zoonoses and Public Health.
Rudolf I, Rettich F, Betášová L, Imrichová K, Mendel J, Hubálek Z, Šikutová S (2019). West Nile virus (linie 2) poprvé detekován v komárech v jižních Čechách: nová endemická oblast?. Epidemiologie, Mikrobiologie, Imunologie, 68: 150-153.
Stejskalová K, Jánová E, Horecký C, Horecká E, Václavek P, Hubálek Z, Relling K, Cvanová M, D'Amico G, Mihalca AD, Modrý D, Knoll A, Horin P (2019). Associations between the presence of specific antibodies to the West Nile Virus infection and candidate genes in Romanian horses from the Danube delta. Molecular Biology Reports.

2018

Blažejová H, Šebesta O, Rettich F, Mendel J, Čabanová V, Miterpáková M, Betášová L, Peško J, Hubálek Z, Kampen H, Rudolf I (2018). Cryptic species Anopheles daciae (Diptera: Culicidae) found in the Czech Republic and Slovakia. Parasitology Research.
Hájková L, Hubálek Z, Kožnarová V, Bartošová L, Možný M (2018). Flowering of allergenically important plant species in relation to the North Atlantic Oscillation system and thermal time in the Czech Republic. Aerobiologia.
Haviernik J, Štefánik M, Fojtíková M, Kali S, Tordo N, Rudolf I, Hubálek Z, Eyer L, Růžek D (2018). Arbidol (Umifenovir): A broad-spectrum antiviral drug that inhibits medically important arthropod-borne flaviviruses. Viruses, 184.
Hubálek Z, Kosina M, Rudolf I, Mendel J, Straková P, Tomešek M (2018). Mortality of Goshawks (Accipiter gentilis) due to West Nile virus lineage 2. Vector-Borne and Zoonotic Diseases.
Rosà R, Andreo V, Tagliapietra V, Baráková I, Arnoldi D, Hauffe HC, Manica M, Rosso F, Blaňarová L, Bona M, Derdáková M, Hamšíková Z, Kazimírová M, Kraljik J, Kocianová E, Mahríková L, Minichová L, Mošanský L, Slovák M, Stanko M, Špitalská E, Ducheyne E, Neteler M, Hubálek Z, Rudolf I, Venclíková K, Silaghi C, Overzier E, Farkas R, Földvári G, Hornok S, Takács N, Rizzoli A (2018). Effect of climate and land use on the spatio-temporal variability of tick-borne bacteria in Europe. International Journal of Environmental Research and Public Health, 732.
Rudolf I, Blažejová H, Straková P, Šebesta O, Peško J, Mendel J, Šikutová S, Hubálek Z, Kampen H, Schaffner F (2018). The invasive Asian tiger mosquito Aedes albopictus (Diptera: Culicidae) in the Czech Republic: Repetitive introduction events highlight the need for extended entomological surveillance. Acta Tropica.
Rudolf I, Blažejová H, Šebesta O, Mendel J, Peško J, Betášová L, Straková P, Šikutová S, Hubálek Z (2018). West Nile virus (linie 2) v komárech na jižní Moravě – očekávání prvních autochtonních lidských případů. Epidemiologie, Mikrobiologie, Imunologie, 67: 44-46.
Straková P, Kubánková M, Vašíčková P, Juřicová Z, Rudolf I, Hubálek Z (2018). Hepatitis E virus in archived sera from wild boars (Sus scrofa), Czech Republic. Transboundary and Emerging Diseases.

2017

Hubálek Z, Juřicová Z, Straková P, Blažejová H, Betášová L, Rudolf I (2017). Serological survey for West Nile virus in wild artiodactyls, Southern Moravia (Czech Republic). Vector-Borne and Zoonotic Diseases.
Hubálek Z (2017). How sunrise and weather affect timing of rooks’ (Corvus frugilegus) morning departure from the winter communal roost. Folia zoologica.
Hubálek Z, Rudolf I (2017). Francisella tularensis prevalence and load in Dermacentor reticulatus ticks in an endemic area in Central Europe. Medical and Veterinary Entomology.
Joó K, Bakonyi T, Szenci O, Ferenczi E, Barna M, Malik P, Hubálek Z, Fehér O, Kutasi O (2017). Comparison of assays for the detection of West Nile virus antibodies in equine serum after natural infection or vaccination. Veterinary Immunology and Immunopathology.
Kuno G, Mackenzie JS, Junglen S, Hubálek Z, Plyusnin A, Gubler DJ (2017). Vertebrate reservoirs of arboviruses: myth, synonym of amplifier, or reality?. Viruses, 185.
Rudolf I, Betášová L, Blažejová H, Venclíková K, Straková P, Šebesta O, Mendel J, Bakonyi T, Schaffner F, Nowotny N, Hubálek Z (2017). West Nile virus in overwintering mosquitoes, central Europe. Parasites & Vectors, 452.

2016

Bakonyi T, Gaydon GK, Schwing R, Vogl W, Häbich A, Thaller D, Weissenböck H, Rudolf I, Hubálek Z, Nowotny N (2016). Chronic West Nile virus infection in kea (Nestor notabilis). Veterinary Microbiology.
Duscher GG, Hodžić A, Weiler M, Vaux AGC, Rudolf I, Sixl W, Medlock JM, Versteirt V, Hubálek Z (2016). First report of Rickettsia raoultii in field collected Dermacentor reticulatus ticks from Austria. Ticks and Tick-borne Diseases.
Hamšíková Z, Silaghi C, Rudolf I, Venclíková K, Mahríková L, Slovák M, Mendel J, Blažejová H, Berthová L, Kocianová E, Hubálek Z, Schnittger L, Kazimírová M (2016). Molecular detection and phylogenetic analysis of Hepatozoon spp. in questing Ixodes ricinus ticks and rodents from Slovakia and Czech Republic. Parasitology Research.
Hubálek Z (2016). The North Atlantic Oscillation system and plant phenology. International Journal of Biometeorology.
Mertens M, Schuster I, Sas MA, Vatansever Z, Hubálek Z, Güven E, Deniz A, Georgiev G, Peshev R, Groschup MH (2016). Crimean-Congo Hemorrhagic Fever Virus in Bulgaria and Turkey. Vector-Borne and Zoonotic Diseases.
Rudolf I, Betášová L, Bischof V, Venclíková K, Blažejová H, Mendel J, Hubálek Z, Kosoy M (2016). Molecular survey of arthropod-borne pathogens in sheep keds (Melophagus ovinus), Central Europe. Parasitology Research.
Rudolf I, Venclíková K, Blažejová H, Betášová L, Mendel J, Hubálek Z, Parola P (2016). First report of Rickettsia raoultii and Rickettsia helvetica in Dermacentor reticulatus ticks from the Czech Republic. Ticks and Tick-borne Diseases.
Venclíková K, Mendel J, Betášová L, Blažejová H, Jedličková P, Straková P, Hubálek Z, Rudolf I (2016). Neglected tick-borne pathogens in the Czech Republic, 2011–2014. Ticks and Tick-borne Diseases.

2015

Kolodziejek J, Seidel B, Jungbauer C, Dimmel K, Kolodziejek M, Rudolf I, Hubálek Z, Allerberger F, Nowotny N (2015). West Nile Virus positive blood donation and subsequent entomological investigation, Austria, 2014. PLoS ONE.
Kříž B, Hubálek Z, Malý M, Daniel M, Straková P, Betášová L (2015). Results of the screening of Tick-Borne Encephalitis virus antibodies in human sera from eight districts collected two decades apart. Vector-Borne and Zoonotic Diseases.
Rudolf I, Bakonyi T, Šebesta O, Mendel J, Peško J, Betášová L, Blažejová H, Venclíková K, Straková P, Nowotny N, Hubálek Z (2015). Co-circulation of Usutu virus and West Nile virus in a reed bed ecosystem. Parasites & Vectors.
Rudolf I, Šebesta O, Straková P, Betášová L, Blažejová H, Venclíková K, Seidel B, Tóth S, Hubálek Z, Schaffner F (2015). Overwintering of Uranotaenia unguiculata adult females in central Europe: a possible way of persistence of the putative new lineage of West Nile virus?. Journal of the American Mosquito Control Association.
Straková P, Šikutová S, Jedličková P, Sitko J, Rudolf I, Hubálek Z (2015). The common coot as sentinel species for the presence of West Nile and Usutu flaviviruses in Central Europe. Research in Veterinary Science.
Vayssier-Taussat M, Kazimírová M, Hubálek Z, Hornok S, Farkas R, Cosson J, Bonnet S, Vourch G, Gasqui P, Mihalca AD, Plantard O, Silaghi C, Cutler S, Rizzoli A (2015). Emerging horizons for tick-borne pathogens: from the "one pathogen-one disease" vision to the pathobiome paradigm. Future Microbiology.
Venclíková K, Mendel J, Betášová L, Hubálek Z, Rudolf I (2015). First evidence of Babesia venatorum and Babesia capreoli in questing Ixodes ricinus ticks in the Czech Republic. Annals of Agricultural and Environmental Medicine.
Vrbovská V, Chalupa P, Straková P, Hubálek Z, Rudolf I (2015). Onemocnění člověka způsobená hantaviry – stále opomíjené zoonózy?. Epidemiologie, Mikrobiologie, Imunologie, 64: 188-196.

2014

Braks M, Medlock JM, Hubálek Z, Hjertqvist M, Perrin Y, Lancelot R, Duchyene E, Hendrickx G, Stroo A, Heyman P, Sprong H (2014). Vector-borne disease intelligence: strategies to deal with disease burden and threats. Frontiers in Public Health.
Hubálek Z, Rudolf I, Čapek M, Bakonyi T, Betášová L, Nowotny N (2014). Usutu Virus in Blackbirds (Turdus merula), Czech Republic, 2011-2012. Transboundary and Emerging Diseases.
Hubálek Z, Rudolf I, Nowotny N (2014). Arboviruses pathogenic for domestic and wild animals. Advances in Virus Research.
Hubálek Z, Šebesta O, Peško J, Betášová L, Blažejová H, Venclíková K, Rudolf I (2014). Isolation of Tahyna virus (California Encephalitis Group) from Anopheles hyrcanus (Diptera, Culicidae), a mosquito species new to, and expanding in, Central Europe. Journal of Medical Entomology.
Pachler K, Lebl K, Berer D, Rudolf I, Hubálek Z, Nowotny N (2014). Putative New West Nile virus lineage in Uranotaenia unguiculata mosquitoes, Austria, 2013. Emerging Infectious Diseases.
Rizzoli A, Silaghi C, Obiegala A, Rudolf I, Hubálek Z, Földvári G, Plantard O, Vayssier-Taussat M, Bonnet S, Špitalská E, Kazimírová M (2014). Ixodes ricinus and its transmitted pathogens in urban and peri-urban areas in Europe: new hazards and relevance for public health. Frontiers in Public Health.
Rudolf I, Bakonyi T, Šebesta O, Mendel J, Peško J, Betášová L, Blažejová H, Venclíková K, Straková P, Nowotny N, Hubálek Z (2014). West Nile virus lineage 2 isolated from Culex modestus mosquitoes in the Czech Republic, 2013: expansion of the European WNV endemic area to the North?. Eurosurveillance.
Rudolf I, Šebesta O, Mendel J, Betášová L, Bocková E, Jedličková P, Venclíková K, Blažejová H, Šikutová S, Hubálek Z (2014). Zoonotic Dirofilaria repens (Nematoda: Filarioidea) in Aedes vexans mosquitoes, Czech Republic. Parasitology Research.
Straková P, Kříž B, Rudolf I, Hubálek Z (2014). Seroprevalence study of hepatitis E virus infection in two districts of the Czech Republic. Epidemiologie, Mikrobiologie, Imunologie, 63: 92-94.
Straková P, Rudolf I, Pavlis O, Hubálek Z (2014). The use of immunoenzymatic method for detection of antibodies against zoonotic diseases in Czech soldiers returning from Afghanistan. Military Medical Science Letters.
Venclíková K, Rudolf I, Mendel J, Betášová L, Hubálek Z (2014). Rickettsiae in questing Ixodes ricinus ticks in the Czech Republic. Ticks and Tick-borne Diseases.
Venclíková K, Betášová L, Šikutová S, Jedličková P, Hubálek Z, Rudolf I (2014). Human pathogenic borreliae in Ixodes ricinus ticks in natural and urban ecosystem (Czech Republic). Acta Parasitologica.

2013

Bakonyi T, Kolodziejek J, Rudolf I, Berčič R, Nowotny N, Hubálek Z (2013). Partial genetic characterization of Sedlec virus (Orthobunyavirus, Bunyaviridae). Infection, Genetics and Evolution.
Bocková E, Rudolf I, Kočišová A, Betášová L, Venclíková K, Mendel J, Hubálek Z (2013). Dirofilaria repens microfilariae in Aedes vexans mosquitoes in Slovakia. Parasitology Research.
Hubálek Z, Ludvíková E, Jahn P, Treml F, Rudolf I, Svobodová P, Šikutová S, Betášová L, Bíreš J, Mojžíš M, Tinák M, Boldižár M, Citsoňová G, Staššíková Z (2013). West Nile virus equine serosurvey in the Czech and Slovak Republics. Vector-Borne and Zoonotic Diseases.
Rushton JO, Lecollinet S, Hubálek Z, Svobodová P, Lussy H, Nowotny N (2013). Tick-borne encephalitis virus in horses, Austria, 2011. Emerging Infectious Diseases.
Sedláček I, Holochová P, Mašlaňová I, Kosina M, Spröer C, Bryndová H, Vandamme P, Rudolf I, Hubálek Z, Švec P (2013). Enterococcus ureilyticus sp. nov. and Enterococcus rotai sp. nov., two urease-producing enterococci from the environment. International Journal of Systematic and Evolutionary Microbiology.

2012

Aliota MT, Jones SA, Dupuis AP, Ciota AT, Hubálek Z, Kramer LD (2012). Characterization of Rabensburg virus, a flavivirus closely related to West Nile virus of the Japanese encephalitis antigenic group. PLoS ONE.
Hubálek Z, Rudolf I (2012). Tick-borne viruses in Europe. Parasitology Research.
Konvalinová J, Rudolf I, Šikutová S, Hubálek Z, Svobodová V, Svoboda M (2012). Contribution to canine babesiosis in the Czech Republic. Acta veterinaria Brno.
Richter D, Debski A, Hubálek Z, Matuschka F (2012). Absence of Lyme disease spirochetes in larval ixodes ricinus ticks. Vector-Borne and Zoonotic Diseases.
Šebesta O, Rudolf I, Betášová L, Peško J, Hubálek Z (2012). An invasive mosquito species Aedes albopictus found in the Czech Republic, 2012. Eurosurveillance.

2011

Hubálek Z, Kříž B, Halouzka J (2011). Serologic survey of humans for Flavivirus West Nile in southern Moravia (Czech Republic). Central European Journal of Public Health.
Jourdain E, Olsen B, Lundkvist A, Hubálek Z, Šikutová S, Waldenström J, Karlsson M, Wahlström M, Jozan M, Falk KI (2011). Surveillance for West Nile Virus in Wild Birds from Northern Europe. Vector-Borne and Zoonotic Diseases.
Široký P, Kubelová M, Bednář M, Modrý D, Hubálek Z, Tkadlec E (2011). The distribution and spreading pattern of Dermacentor reticulatus over its threshold area in the Czech Republic—How much is range of this vector expanding?. Veterinary Parasitology.

2010

Calistri P, Giovannini A, Hubálek Z, Ionescu A, Monaco F, Savini G, Lelli R (2010). Epidemiology of West Nile in Europe and in the Mediterranean Basin. Open Virology journal, 4: 29-37.
Hubálek Z (2010). Zdravotní význam komárů. Dezinfekce, dezinsekce, deratizace, 19: 66-69.
Hubálek Z, Rudolf I, Bakonyi T, Kazdová K, Halouzka J, Šebesta O, Šikutová S, Juřicová Z, Nowotny N (2010). Mosquito (Diptera: Culicidae) surveillance for arboviruses in an area endemic for West Nile (Lineage Rabensburg) and Ťahyňa viruses in central Europe. Journal of Medical Entomology.
Kazdová K, Hubálek Z (2010). Vyšetření komárů na přítomnost arbovirů na jižní Moravě v letech 2006-2008. Epidemiologie, Mikrobiologie, Imunologie, 59: 107-111.
Martínková N, Bačkor P, Bartonička T, Blažková P, Červený J, Falteisek L, Gaisler J, Hanzal V, Horáček D, Hubálek Z, Jahelková H, Kolařík M, Korytár Ľ, Kubátová A, Lehotská B, Lehotský R, Lučan RK, Májek O, Matějů J, Řehák Z, Šafář J, Tájek P, Tkadlec E, Uhrin M, Wagner J, Weinfurtová D, Zima J, Zukal J, Horáček I (2010). Increasing incidence of Geomyces destructans fungus in bats from the Czech Republic and Slovakia. PLoS ONE.
Nováková D, Pantůček R, Hubálek Z, Falsen E, Busse H, Schumann P, Sedláček I (2010). Staphylococcus microti sp. nov., isolated from the common vole (Microtus arvalis). International Journal of Systematic and Evolutionary Microbiology.
Randolph SE, Anda P, Avsic-Zupanc T, Bormane A, Egyed L, Ferenczi E, García-Pérez AL, Gern L, Hubálek Z, Kazimírová M, Kondrusik M, Pfister K, Rizzoli A, Vasilenko V, Vladimirescu A, Žygutiene M (2010). Human activities predominate in determining changing incidence of tick-borne encephalitis in Europe. Eurosurveillance.
Rudolf I, Šikutová S, Kopecký J, Hubálek Z (2010). Salivary gland extract from engorged Ixodes ricinus (Acari: Ixodidae) stimulates in vitro growth of Borrelia burgdorferi sensu lato. Journal of Basic Microbiology.
Šebesta O, Halouzka J, Hubálek Z, Juřicová Z, Rudolf I, Šikutová S, Svobodová P, Reiter P (2010). Mosquito (Diptera: Culicidae) fauna in an area endemic for West Nile virus. Journal of Vector Ecology.
Weissenböck H, Hubálek Z, Bakonyi T, Nowotny N (2010). Zoonotic mosquito-borne flaviviruses: worldwide presence of agents with proven pathogenicity and potential candidates of future emerging diseases. Veterinary Microbiology.

2009

Hubálek Z (2009). Biogeography of tick-borne Bhanja virus (Bunyaviridae) in Europe. Interdisciplinary Perspectives on Infectious Diseases, 2009: 1-11.
Jarošová V, Rudolf I, Halouzka J, Hubálek Z (2009). Borrelia burgdorferi s.l. v klíšťatech na ostravských haldách. Epidemiologie, Mikrobiologie, Imunologie, 58: 90-97.
Juřicová Z, Hubálek Z, Halouzka J, Šikutová S (2009). Serological examination of songbirds (Passeriformes) for mosquito-borne viruses Sindbis, Ťahyňa, and Batai in a South Moravian Wetland (Czech Republic). Vector-Borne and Zoonotic Diseases.
Juřicová Z, Hubálek Z (2009). Serologic survey of the wild boar (Sus scrofa) for Borrelia burgdorferi sensu lato. Vector-Borne and Zoonotic Diseases.
Rudolf I, Mendel J, Šikutová S, Švec P, Masaříková J, Nováková D, Buňková L, Sedláček I, Hubálek Z (2009). 16S rRNA gene-based identification of cultured bacterial flora from host-seeking Ixodes ricinus, Dermacentor reticulatus and Haemaphysalis concinna ticks, vectors of vertebrate pathogens. Folia Microbiologica.
Svobodová P, Pejčoch M, Heroldová M, Pavlíček T, Nevo E, Šumbera R, Hubálek Z (2009). Examination of rodents (Rodentia) for emmonsiosis in the Czech Republic, Israel and Africa. Czech Mycology, 61: 99-106.
Šebesta O, Rettich F, Minář J, Halouzka J, Hubálek Z, Juřicová Z, Rudolf I, Šikutová S, Gelbič I, Reiter P (2009). Presence of the mosquito Anopheles hyrcanus in South Moravia, Czech Republic. Medical and Veterinary Entomology.
Šikutová S, Hornok S, Hubálek Z, Doležálková I, Juřicová Z, Rudolf I (2009). Serological survey of domestic animals for tick-borne encephalitis and Bhanja viruses in northeastern Hungary. Veterinary Microbiology.

2008

Halouzka J, Juřicová Z, Janková J, Hubálek Z (2008). Serologic survey of wild boars for mosquito-borne viruses in South Moravia (Czech Republic). Veterinární medicína.
Hubálek Z (2008). Mosquito-borne viruses in Europe. Parasitology Research.
Hubálek Z, Čapek M (2008). Migration distance and the effect of North Atlantic Oscillation on the spring arrival of birds in Central Europe. Folia zoologica.
Hubálek Z, Wegner E, Halouzka J, Tryjanowski P, Jerzak L, Šikutová S, Rudolf I, Kruszewicz AG, Jaworski Z, Włodarczyk R (2008). Serologic survey of potential vertebrate hosts for West Nile Virus in Poland. Viral Immunology.
Hubálek Z, Halouzka J, Juřicová Z, Šikutová S, Rudolf I, Honza M, Janková J, Chytil J, Marec F, Sitko J (2008). Serologic survey of birds for West Nile Flavivirus in Southern Moravia (Czech Republic). Vector-Borne and Zoonotic Diseases.
Meister T, Lussy H, Bakonyi T, Šikutová S, Rudolf I, Vogl W, Winkler H, Frey H, Hubálek Z, Nowotny N, Weissenböck H (2008). Serological evidence of continuing high Usutu virus (Flaviviridae) activity and establishment of herd immunity in wild birds in Austria. Veterinary Microbiology.
Randolph SE, Asokliene L, Avsic-Zupanc T, Bormane A, Burri C, Gern L, Golovljova I, Hubálek Z, Knap N, Kondrusik M, Kupca A, Pejčoch M, Vasilenko V, Žygutiene M (2008). Variable spikes in tick-borne encephalitis incidence in 2006 independent of variable tick abundance but related to weather. Parasites & Vectors.
Rudolf I, Hubálek Z, Šikutová S, Švec P (2008). Opomíjené virové infekce přenášené hematofágními členovci v České republice. Epidemiologie, Mikrobiologie, Imunologie, 57: 80-89.
Scholz HC, Hubálek Z, Nesvadbová J, Tomaso H, Vergnaud G, Le Fleche P, Whatmore AM, Al Dahouk S, Krüger M, Lodri C, Pfeffer M (2008). Isolation of Brucella microti from soil. Emerging Infectious Diseases.
Scholz HC, Hubálek Z, Sedláček I, Vergnaud G, Tomaso H, Al Dahouk S, Melzer F, Kämpfer P, Neubauer H, Cloeckaert A, Maquart M, Zygmunt MS, Whatmore AM, Falsen E, Bahn P, Göllner C, Pfeffer M, Huber B, Busse H, Nöckler K (2008). Brucella microti sp. nov., isolated from the common vole Microtus arvalis. International Journal of Systematic and Evolutionary Microbiology.
Šumilo D, Bormane A, Asokliene L, Vasilenko V, Golovljova I, Avsic-Zupanc T, Hubálek Z, Randolph SE (2008). Socio-economic factors in the differential upsurge of tick-borne encephalitis in Central and Eastern Europe. Reviews in Medical Virology.

2007

Hartemink NA, Davis SA, Reiter P, Hubálek Z, Heesterbeek JAP (2007). Importance of bird-to-bird transmission for the establishment of West Nile virus. Vector-Borne and Zoonotic Diseases.
Hubálek Z, Scholz H, Sedláček I, Melzer F, Sanogo YO, Nesvadbová J (2007). Brucellosis of the common vole (Microtus arvalis). Vector-Borne and Zoonotic Diseases.
Šikutová S, Rudolf I, Golovchenko M, Rudenko N, Grubhoffer L, Hubálek Z (2007). Detection of Anaplasma DNA in Ixodes ricinus ticks: pitfalls. Folia Parasitologica.
Vašíčková P, Pšikal I, Králík P, Widen F, Hubálek Z, Pavlík I (2007). Hepatitis E virus: a review. Veterinární medicína.

2006

Heneberg P, Šírek J, Škorpíková V, Šimeček K, Šafránek J, Mazánek D, Hubálek Z, Jeřábková E (2006). Overview of sand martin (Riparia riparia) localities in the Czech Republic. Linzer Biologische Beiträge, 38: 1413-1447.
Hubálek Z (2006). Ptačí chřipka a tažní ptáci. Crex - Zpravodaj Jihomoravské pobočky ČSO, 26: 131-137.
Hubálek Z, Lukáčová L, Halouzka J, Širůček P, Januška J, Přecechtělová J, Procházka P (2006). Import of West Nile virus infection in the Czech Republic. European Journal of Epidemiology.
Hubálek Z, Halouzka J, Juřicová Z, Šikutová S, Rudolf I (2006). Effect of forest clearing on the abundance of Ixodes ricinus ticks and the prevalence of Borrelia burgdorferi s.l. Medical and Veterinary Entomology.
Rappole JH, Hubálek Z (2006). Birds and influenza H5N1 virus movement to and within North America. Emerging Infectious Diseases.
Stünzner D, Hubálek Z, Halouzka J, Wendelin I, Sixl W, Marth E (2006). Prevalence of Borrelia burgdorferi sensu lato in the tick Ixodes ricinus in the Styrian mountains of Austria. Wiener klinische Wochenschrift: the Middle European Journal of Medicine.

2005

Bakonyi T, Hubálek Z, Rudolf I, Nowotny N (2005). Novel flavivirus or new lineage of West Nile Virus, central Europe. Emerging Infectious Diseases.
Hubálek Z, Burda H, Scharff A, Heth G, Nevo E, Šumbera R, Peško J, Zima J (2005). Emmonsiosis of subterranean rodents (Bathyergidae, Spalacidae) in Africa and Israel. Medical Mycology.
Hubálek Z (2005). Co-fluctuation among bird species in their migration timing. Folia zoologica.
Hubálek Z, Hudec K, Vačkař J (2005). Přílet tažných ptáků na jižní Moravu v letech 1997-1999. Sylvia, 41: 59-71.
Hubálek Z, Škorpíková V, Horal D (2005). Avian botulism at a sugar beet processing plant in South Moravia (Czech Republic). Veterinární medicína.
Hubálek Z (2005). North Atlantic weather oscillation and human infectious diseases in the Czech Republic, 1951-2003. European Journal of Epidemiology.
Hubálek Z, Zeman P, Halouzka J, Juřicová Z, Šťovíčková E, Bálková H, Šikutová S, Rudolf I (2005). Mosquitoborne viruses, Czech republic, 2002. Emerging Infectious Diseases.
Rudolf I, Golovchenko M, Šikutová S, Rudenko N, Grubhoffer L, Hubálek Z (2005). Babesia microti (Piroplasmida: Babesiidae) in nymphal Ixodes ricinus (Acari: Ixodidae) in the Czech Republic. Folia Parasitologica.

2004

Hubálek Z (2004). An annotated checklist of pathogenic microorganisms associated with migratory birds. Journal of Wildlife Diseases.
Hubálek Z, Halouzka J, Juřicová Z (2004). Borreliae in Ixodes ricinus ticks feeding on humans. Medical and Veterinary Entomology.
Hubálek Z, Zeman P, Halouzka J, Juřicová Z, Šťovíčková E, Bálková H, Šikutová S, Rudolf I (2004). Protilátky k virům přenosným komáry u středočeské populace z oblasti zasažené povodní v roce 2002. Epidemiologie, Mikrobiologie, Imunologie, 53: 112-120.
Hubálek Z (2004). Global weather variability affects avian phenology: a long-term analysis, 1881-2001. Folia zoologica.

2003

Hubálek Z, Halouzka J, Juřicová Z (2003). Borrelie v klíšťatech parazitujících na člověku a profylaxe lymské borreliózy. Epidemiologie, Mikrobiologie, Imunologie, 52: 13-17.
Hubálek Z (2003). Spring migration of birds in relation to North Atlantic Oscillation. Folia zoologica.
Hubálek Z, Halouzka J, Juřicová Z (2003). Longitudinal surveillance of the tick Ixodes ricinus for borreliae. Medical and Veterinary Entomology.
Hubálek Z (2003). Protectants used in the cryopreservation of microorganisms. Cryobiology.
Hubálek Z (2003). Emerging human infectious diseases: anthroponoses, zoonoses, and sapronoses. Emerging Infectious Diseases.
Hubálek Z, Stünzner D, Halouzka J, Sixl W, Wendelin I, Juřicová Z, Sanogo YO (2003). Prevalence of borreliae in ixodid ticks from a floodplain forest ecosystem. Wiener klinische Wochenschrift: the Middle European Journal of Medicine.
Hubálek Z, Kříž B (2003). Západonilská horečka. Klinická mikrobiologie a infekční lékařství, 9: 59-68.
Hubálek Z, Halouzka J, Juřicová Z (2003). Host-seeking activity of ixodid ticks in relation to weather variables. Journal of Vector Ecology.
Nohýnková E, Kubek J, Měšťánková O, Chalupa P, Hubálek Z (2003). Případ infekce Babesia microti importované do České republiky z USA. Časopis lékařů českých, 142: 377-381.
Rappole JH, Hubálek Z (2003). Migratory birds and West Nile virus. Journal of Applied Microbiology.
Rudolf I, Hubálek Z (2003). Effect of the salivary gland and midgut extracts from Ixodes ricinus and Dermacentor reticulatus (Acari : Ixodidae) on the growth of Borrelia garinii in vitro. Folia Parasitologica.
Weingartl HM, Drebot MA, Hubálek Z, Halouzka J, Andonova M, Dibernardo A, Cottam-Birt C, Larence J, Marszal P (2003). Comparison of assays for the detection of West Nile virus antibodies in chicken serum. Canadian Journal of Veterinary Research-Revue Canadienne de Recherche Veterinaire.
Weissenböck H, Hubálek Z, Halouzka J, Pichlmair A, Maderner A, Fragner K, Kolodziejek J, Loupal G, Kölbl S, Nowotny N (2003). Screening for West Nile virus infections of susceptible animal species in Austria. Epidemiology and Infection.

2002

Hubálek Z, Treml F, Juřicová Z, Huňady M, Halouzka J, Janík V, Bill D (2002). Serological survey of the wild boar (Sus scrofa) for tularaemia and brucellosis in South Moravia, Czech Republic. Veterinární medicína.
Hubálek Z (2002). Infekční onemocnění podle zdroje nákazy: antroponózy, zoonózy a sapronózy. Klinická mikrobiologie a infekční lékařství, 8: 160-163.
Juřicová Z, Halouzka J, Hubálek Z (2002). Serological survey for antibodies to Borrelia burgdorferi in rodents and detection of spirochaetes in ticks and fleas in South Moravia (Czech Republic). Biologia.

2001

Heroldová M, Němec M, Hubálek Z, Halouzka J (2001). Enzyme activities of Borrelia burgdorferi sensu lato. Folia Microbiologica.
Hubálek Z (2001). Comparative symptomatology of West Nile fever. Lancet.
Hubálek Z (2001). Seasonal variation of forest habitat preferences by birds in a lowland riverine ecosystem. Folia zoologica.
Treml F, Hubálek Z, Halouzka J, Juřicová Z, Huňady M, Janík V (2001). Analýza výskytu tularémie na okrese Břeclav v letech 1994-1999. Epidemiologie, Mikrobiologie, Imunologie, 50: 4-9.

2000

Higgins JA, Hubálek Z, Halouzka J, Elkins KL, Sjostedt A, Shipley M, Ibrahim MS (2000). Detection of Francisella tularensis in infected mammals and vectors using a probe-based polymerase chain reaction. American Journal of Tropical Medicine and Hygiene.
Hubálek Z (2000). Measures of species diversity in ecology: an evaluation. Folia zoologica.
Hubálek Z, Savage HM, Halouzka J, Juřicová Z, Sanogo YO, Lusk S (2000). West Nile Virus Investigations in South Moravia, Czechland. Viral Immunology.
Hubálek Z (2000). European experience with the West Nile Virus ecology and epidemiology: could it be relevant for the New World?. Viral Immunology.
Juřicová Z, Halouzka J, Hubálek Z (2000). Prevalence of antibodies to Borrelia burgdorferi in game animals in South Moravia, Czech Republic. Veterinární medicína.
Rappole JH, Derrickson SR, Hubálek Z (2000). Migratory birds and spread of West Nile virus in the Western Hemisphere. Emerging Infectious Diseases.
Sanogo YO, Halouzka J, Hubálek Z (2000). Spirochetes, including Borrelia burgdorferi sensu lato, in mosquitoes. American Journal of Tropical Medicine and Hygiene.
Sanogo YO, Halouzka J, Hubálek Z, Němec M (2000). Detection of spirochetes in, and isolation from, culicine mosquitoes. Folia Parasitologica.
Sanogo YO, Reipert S, Halouzka J, Hubálek Z, Němec M (2000). Isolation and morphological characterization of mosquito spirochetes from a lyme disease endemic area. New York Academy of Sciences. Annals, aNew York Academy of ScienceAnnals.

1999

Halouzka J, Wilske B, Stünzner D, Sanogo YO, Hubálek Z (1999). Isolation of Borrelia afzelii from overwintering Culex pipiens biotype molestus mosquitoes. Infection.
Hubálek Z (1999). Emmonsiosis of wild rodents and insectivores in Czechland. Journal of Wildlife Diseases.
Hubálek Z (1999). Seasonal changes of bird communities in a managed lowland riverine ecosystem. Folia zoologica.
Hubálek Z, Halouzka J, Juřicová Z, Příkazský Z, Žáková J, Šebesta O (1999). Surveillance virů přenosných komáry na Břeclavsku v povodňovém roce 1997. Epidemiologie, Mikrobiologie, Imunologie, 48: 91-96.
Hubálek Z, Halouzka J, Juřicová Z (1999). West Nile Fever in Czechland. Emerging Infectious Diseases.
Hubálek Z, Halouzka J (1999). West Nile Fever - a reemerging mosquito-borne viral disease in Europe. Emerging Infectious Diseases.
Hudec K, Hubálek Z, Vačkař J (1999). Přílet ptáků v jihomoravském regionu v roce 1997. Zprávy Moravského ornitologického spolku, 57: 117-128.
Juřicová Z, Hubálek Z (1999). Serological surveys for arboviruses in the game animals of southern Moravia (Czech Republic). Folia zoologica.
Rychnovský B, Hubálek Z (1999). Adiasporomykóza drobných savců na Třebíčsku. Přírodovědný sborník Západomoravského muzea v Třebíči=Acta Scientiarum Naturalium Musei Moraviae Occidentalis, 39: 89-92.
Stünzner D, Pierer K, Hubálek Z, Halouzka J, Aberer E, Millner MM, Marth E (1999). Species identification of Borrelia burgdorferi sensu lato from tick and human isolates in Styria (Austria) by PCR-RFLP analysis. Wiener klinische Wochenschrift: the Middle European Journal of Medicine.

1998

Gray JS, Kahl O, Robertson JN, Daniel M, Estrada-Pena A, Gettinby G, Jaenson TGT, Jensen P, Jongejan F, Korenberg E, Kurtenbach K, Zeman P, Cinco M, de Boer R, Fingerle V, Hubálek Z, Manelli A, Perez-Eid C, Radda A, Randolph S, Řeháček J, Stanczak J, Strle F (1998). Lyme borreliosis habitat assessment. Zentralblatt für Bakteriologie : International Journal of Medical, 287: 211-228.
Halouzka J, Postic D, Hubálek Z (1998). Isolation of the spirochaete Borrelia afzelii from the mosquito Aedes vexans in the Czech Republic. Medical and Veterinary Entomology.
Heroldová M, Němec M, Hubálek Z (1998). Growth parameters of Borrelia burgdorferi sensu stricto at various temperatures. Zentralblatt für Bakteriologie : International Journal of Medical, 288: 451-455.
Hubálek Z, Halouzka J, Heroldová M (1998). Growth temperature ranges of Borrelia burgdorferi sensu lato strains. Journal of Medical Microbiology.
Hubálek Z, Sixl W, Halouzka J (1998). Francisella tularensis in Dermacentor reticulatus ticks from the Czech Republic and Austria. Wiener klinische Wochenschrift: the Middle European Journal of Medicine.
Hubálek Z, Páčová Z, Halouzka J, Sedláček I, Dlouhý M, Honza M (1998). Selective isolation of Pseudomonas stutzeri from vertebrate faeces on Rambach agar. Zentralblatt für Bakteriologie : International Journal of Medical, 288: 343-349.
Hubálek Z, Nesvadbová J, Halouzka J (1998). Emmonsiosis of rodents in an agroecosystem. Medical Mycology.
Hubálek Z, Halouzka J, Juřicová Z (1998). West Nile flavivirus activity in South Moravia, Czechland, 1997. Arthropod-borne virus Information Exchange.
Hubálek Z, Gaisler J, Nesvadbová J (1998). Emmonsiosis of small mammals (Rodentia, Insectivora) in the Pálava Biosphere Reserve of the UNESCO. Acta Societatis Zoologicae Bohemicae, 62: 101-104.
Hubálek Z, Halouzka J, Juřicová Z (1998). Investigation of haematophagous arthropods for borreliae - summarized data, 1988-1996. Folia Parasitologica.
Hubálek Z, Halouzka J, Juřicová Z, Šebesta O (1998). First isolation of mosquito-borne West Nile virus in the Czech Republic. Acta virologica.
Hubálek Z, Halouzka J (1998). Prevalence rates of Borrelia burgdorferi sensu lato in host-seeking Ixodes ricinus ticks in Europe. Parasitology Research.
Stünzner D, Hubálek Z, Halouzka J, Postic D, Pierer K, Marth E (1998). Prevalence of Borrelia burgdorferi s.l. in Ixodes ricinus ticks from Styria (Austria) and species identification by PCR-RFLP Analysis. Zentralblatt für Bakteriologie : International Journal of Medical, 288: 471-478.

1997

Hubálek Z, Krška A, Gaisler J, Zejda J, Heroldová M, Rychnovský B (1997). Emmonsiosis of small mammals (Rodentia, Insectivora) in southwest Moravia, Czech Republic. Folia zoologica.
Hubálek Z, Sixl W, Halouzka J, Mikulášková M (1997). Prevalence of Francisella tularensis in Dermacentor reticulatus ticks collected in adjacent areas of the Czech and Austrian Republics. Central European Journal of Public Health.
Hubálek Z (1997). Trends of bird populations in a managed lowland riverine ecosystem. Folia zoologica.
Hubálek Z, Halouzka J (1997). Distribution of Borrelia burgdorferi sensu lato genomic groups in Europe, a review. European Journal of Epidemiology.
Hubálek Z, Halouzka J (1997). Mosquitoes (Diptera: Culicidae) in contrast to ticks (Acari:Ixodidae) do not carry Francisella tularensis in a natural focus of tularemia in the Czech Republic. Journal of Medical Entomology.
Hubálek Z (1997). Immunoadjuvant effect of inactivated Cryptococcus neoformans. Mycopathologia.
Sixl W, Karpíšková R, Hubálek Z, Halouzka J, Mikulášková M, Salava J (1997). Campylobacter spp. and Salmonella spp. in black-headed gulls (Larus ridibundus). Central European Journal of Public Health.

1996

Baruš V, Hubálek Z, Coy Otero A (1996). Testing the context and extent of host-parasite co-evolution: nematodes parasitising cuban lizards (Sauria: Iguanidae). Folia zoologica.
Halouzka J, Hubálek Z (1996). Biting midges (Ceratopogonidae) of medical and veterinary importance (a review). Acta scientiarum naturalium Academiae scientiarum Bohemicae Brno, 30: 1-56.
Hubálek Z, Anderson JF, Halouzka J, Hájek V (1996). Borreliae in immature Ixodes ricinus (Acari: Ixodidae) ticks parasitizing birds in the Czech Republic. Journal of Medical Entomology.
Hubálek Z, Treml F, Halouzka J, Juřicová Z, Huňady M, Janík V (1996). Frequent isolation of Francisella tularensis from Dermacentor reticulatus ticks in an enzootic focus of tularaemia. Medical and Veterinary Entomology.
Hubálek Z, Halouzka J, Juřicová Z (1996). A simple method of transmission risk assessment in enzootic foci of Lyme borreliosis. European Journal of Epidemiology.
Hubálek Z, Halouzka J (1996). Arthropod-borne viruses of vertebrates in Europe. Acta scientiarum naturalium Academiae scientiarum Bohemicae Brno, 30: 1-95.
Juřicová Z, Halouzka J, Forejtek P, Hubálek Z (1996). Detection of antibodies to Borrelia burgdorferi in hares, wild boars and pheasants in the Czech Republic. Biologia.
Mátlová L, Halouzka J, Juřicová Z, Hubálek Z (1996). Comparative experimental infection of Ixodes ricinus and Dermacentor reticulatus (Acari: Ixodidae) with Borrelia burgdorferi sensu lato. Folia Parasitologica.

1995

Baruš V, Hubálek Z (1995). Phylogenetic systematics of iguanine lizards (Reptilia: Iguaninae) - parasitological arguments. Folia zoologica.
Halouzka J, Juřicová Z, Mátlová L, Hubálek Z (1995). Borreliae in larval Ixodes ricinus ticks. Medical and Veterinary Entomology.
Hubálek Z, Juřicová Z, Halouzka J (1995). A Survey of free-living birds as hosts and "Lessors" of microbial pathogens. Folia zoologica.
Hubálek Z, Nesvadbová J, Rychnovský B (1995). A heterogeneous distribution of Emmonsia parva var. crescens in an agro-ecosystem. Journal of Medical and Veterinary Mycology, 33: 197-200.
Hubálek Z, Rychnovský B, Peško J (1995). Adiasporomycosis of rodents inhabiting the shores of fishponds. Česká mykologie, 48: 139-144.
Hubálek Z, Sixl W, Mikulášková M, Sixl-Voigt B, Thiel W, Halouzka J, Juřicová Z, Rosický B, Mátlová L, Honza M, Hájek V, Sitko J (1995). Salmonellae in gulls and other free-living birds in the Czech Republic. Central European Journal of Public Health.
Hubálek Z, Pow I, Reid HW, Hussain MH (1995). Antigenic similarity of Central European encephalitis and louping-ill viruses. Acta virologica.
Hubálek Z, Rychnovský B, Peško J (1995). Adiasporomykóza drobných savců v CHKO Žďárské vrchy. Vlastivědný sborník Vysočiny : oddíl věd přírodních, 12: 185-189.

1994

Hubálek Z (1994). Pathogenic Microorganisms Associated with Free-living Birds (A Review). Přírodovědné práce ústavů Akademie věd České republiky v Brně, 28: 1-74.
Hubálek Z, Halouzka J, Juřicová Z, Svobodová Š (1994). Seasonal Distribution of Borreliae in Ixodes ricinus Ticks. Zentralblatt für Bakteriologie : International Journal of Medical, 280: 423-431.
Hubálek Z, Sixl W, Šebek Z, Stünzner D (1994). Isolation of tick-borne encephalitis virus from the bank vole (Clethrionomys glareolus) in Austria. Geographia medica, Suppl. 9: 55-62.
Hubálek Z, Rödl P (1994). Assessment of the Mouse Open-Field Activity after Infection with Ťahyňa Virus (California Serogroup, Bunyaviridae). Laboratory Animal Science, 44: 186-188.
Hubálek Z, Sixl W, Mikulášková M, Sixl-Voigt B, Thiel W, Halouzka J, Juřicová Z, Mátlová L, Honza M, Hájek V, Rosický B (1994). Salmonellae in free-living birds. Geographia medica, Suppl. 10: 107-120.
Mikulášková M, Sixl-Voigt B, Hubálek Z, Sixl W, Thiel W, Salava J (1994). Zusammenhänge beim Auftreten von Salmonellen in der Geflügelzucht und Brutplätzen von Möwen. Geographia medica, Suppl. 10: 121-129.
Sixl W, Hubálek Z, Mikulášková M (1994). Salmonely u ptáků. Úloha racka chechtavého při roznosu patogenních agens v agrocenózách. Veterinářství, 44: 264-265.
Žaludko J, Vrbová O, Hachlincová R, Kohl I, Hubálek Z, Juřicová Z, Kožuch O, Elečková E, Labuda M (1994). Rodinné epidémie kliešťovej encefalitídy na strednom Považí. Bratislavske Lekarske Listy.

1993

Hubálek Z, Halouzka J, Juřicová Z (1993). Seasonal Dynamics of Borreliae in the Tick Ixodes ricinus. Folia Microbiologica.
Hubálek Z, Halouzka J, Juřicová Z (1993). Prevalence of borreliae in Ixodes ricinus ticks from urban parks. Folia Parasitologica.
Hubálek Z, Horáková M (1993). CompTitr - A Program for Numeric Evaluation of Antigenic Similarities. Binary: Computing in Microbiology, 5: 155-158.
Hubálek Z, Juřicová Z, Halouzka J (1993). Eperythrozoon - a lesson for arbovirologists. Acta virologica.
Hubálek Z, Juřicová Z, Halouzka J, Šebek Z (1993). Isolation of rickettsial organism (Eperythrozoon) from mice during virological testing of ixodid ticks. Folia Parasitologica.
Hubálek Z, Juřicová Z, Svobodová Š, Halouzka J (1993). A Serologic Survey for Some Bacterial and Viral Zoonoses in Game Animals in the Czech Republic. Journal of Wildlife Diseases.
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