prof. RNDr. Petr Koubek CSc.

Position full-time researcher
Direction wildlife ecology

+420 543 422 548

Finished projects

Management plan for Eurasian lynx, grey wolf, and brown bear in the Czech Republic (2015–2016)
Monitoring of large carnivores in SCI Beskydy (2011–2014)
Genetic structure of sika deer populations in the Czech Republic (2009–2012)
Species diversity and ecology of selected West African vertebrates (2004–2008)

Publications and Applied outputs

2025

de Jong MJ, Anaya G, Niamir A, Pérez-González J, Broggini C, del Pozo AM, Nebenfuehr M, de la Peña E, Ruiz-Olmo J, Seoane JM, Vedel G, Barboiron A, Bartoš L, Buzan E, Carden RF, Darchiashvili G, Frantz AC, Gačić D, Gérard A, Gort-Esteve A, Guillaumat E, Hantschmann A, Hemami M, Höglund J, de Jong JF, Karaiskou N, Kerdikoshvili N, Kern C, Konjevic D, Koubek P, Krojerová-Prokešová J, McDevitt AD, Merker S, Pellerin M, Pfenninger M, Røed KH, Saint-Andrieux C, Sarigol F, Sykut M, Triantafyllidis A, Pemberton J, Saarma U, Iacolina L, Niedziałkowska M, Zachos FE, Carranza J, Janke A (2025). Red deer resequencing reveals the importance of sex chromosomes for reconstructing Late Quaternary events. Molecular Biology and Evolution, msaf031.
Oliveira T, Mattisson J, Vogt K, Linnell J, Odden J, Oeser J, Premier J, Rodríguez-Recio M, Belotti E, Bufka L, Černe R, Duľa M, Fležar U, Gonev A, Herdtfelder M, Heurich M, Hočevar L, Hvala T, Iľko T, Kont R, Koubek P, Krojerová-Prokešová J, Kubala J, Kübarsepp M, Kusak J, Kutal M, Machciník B, Männil P, Melovski D, Molinari P, Ornicans A, Pavlov A, Prostor M, Slijepčević V, Smolko P, Tám B, Krofel M (2025). Ecological and intrinsic drivers of foraging parameters of Eurasian lynx at a continental scale. Journal of Animal Ecology.
Premier J, Bastianelli M, Oeser J, Anders O, Andrén H, Aronsson M, Bagrade G, Belotti E, Breitenmoser-Würsten C, Bufka L, Černe R, Červený J, Drouet-Hoguet N, Ďula M, Fuxjäger C, Herdtfelder M, Hočevar L, Jędrzejewski W, Kont R, Koubek P, Kowalczyk R, Krofel M, Krojerová-Prokešová J, Kubala J, Kusak J, Kutal M, Linnell JDC, Mattisson J, Middelhoff TL, Melovski D, Molinari-Jobin A, Odden J, Okarma H, Ornicans A, Pagon N, Persson J, Schmidt K, Sindičić M, Slijepčević V, Tám B, Zimmermann F, Kramer-Schadt S, Heurich M (2025). Survival of Eurasian lynx in the human-dominated landscape of Europe. Conservation Biology, e14439.

2024

Kubala J, Signer J, Finďo S, Duľa M, Krojerová-Prokešová J, Mysłajek RW, Nowak S, Bučko J, Skuban M, Kutal M, Bojda M, Labuda J, Figura M, Barančeková M, Homolka M, Koubek P, Slamka M, Tám B, Belák M, Iľko T, Machciník B, Klinga P, Sedliak M, Kropil R, Smolko P (2024). Factors shaping home ranges of Eurasian lynx (Lynx lynx) in the Western Carpathians.. Scientific Reports.

2023

Gajdárová B, Belotti E, Bufka L, Volfová J, Wölfl S, Mináriková T, Hollerbach L, Duľa M, Kleven O, Kutal M, Nowak C, Ozoliņš J, Tám B, Bryja J, Koubek P, Krojerová-Prokešová J (2023). Long-term genetic monitoring of a reintroduced Eurasian lynx population does not indicate an ongoing loss of genetic diversity. Global Ecology and Conservation, e02399.
Krojerová-Prokešová J, Gajdárová B, Reiners TE, Bolechová P, Kleven O, Koubek P, Nowak C, Ozoliņš J, Tám B, Voloshina I, Vallo P (2023). Ex situ versus in situ Eurasian lynx populations: implications for successful breeding and genetic rescue. Conservation Genetics.
Oeser J, Heurich M, Kramer-Schadt S, Andrén H, Bagrade G, Belotti E, Bufka L, Breitenmoser-Würsten C, Černe R, Duľa M, Fuxjäger C, Gomerčić T, Jędrzejewski W, Kont R, Koubek P, Kowalczyk R, Krofel M, Krojerová-Prokešová J, Kubala J, Kusak J, Kutal M, Linnell JDC, Mattisson J, Molinari-Jobin A, Männil P, Odden J, Okarma H, Oliveira T, Pagon N, Persson J, Remm J, Schmidt K, Signer S, Tám B, Vogt K, Zimmermann F, Kuemmerle T (2023). Prerequisites for coexistence: human pressure and refuge habitat availability shape continental-scale habitat use patterns of a large carnivore. Landscape Ecology.
Oeser J, Heurich M, Kramer-Schadt S, Mattisson J, Krofel M, Krojerová-Prokešová J, Zimmermann F, Anders O, Andrén H, Bagrade G, Belotti E, Breitenmoser-Würsten C, Bufka L, Černe R, Drouet-Hoguet N, Duľa M, Fuxjäger C, Gomerčić T, Jędrzejewski W, Kont R, Koubek P, Kowalczyk R, Kusak J, Kubala J, Kutal M, Linnell JDC, Molinari-Jobin A, Männil P, Middelhoff TL, Odden J, Okarma H, Oliveira T, Pagon N, Persson J, Remm J, Schmidt K, Signer S, Tám B, Vogt K, Kuemmerle T (2023). Integrating animal tracking datasets at a continental scale for mapping Eurasian lynx habitat. Diversity and Distributions.

2022

Ripari L, Premier J, Belotti E, Bluhm H, Breitenmoser-Würsten C, Bufka L, Červený J, Drouet-Hoguet N, Fuxjäger C, Jędrzejewski W, Kont R, Koubek P, Kowalczyk R, Krofel M, Krojerová-Prokešová J, Molinari-Jobin A, Okarma H, Oliveira T, Remm J, Schmidt K, Zimmermann F, Kramer-Schadt S, Heurich M (2022). Human disturbance is the most limiting factor driving habitat selection of a large carnivore throughout Continental Europe. Biological Conservation, 109446.

2019

Červený J, Krojerová-Prokešová J, Kušta T, Koubek P (2019). The change in the attitudes of Czech hunters towards Eurasian lynx: Is poaching restricting lynx population growth?. Journal for Nature Conservation.
Krojerová-Prokešová J, Turbaková B, Jelenčič M, Bojda M, Kutal M, Skrbinšek T, Koubek P, Bryja J (2019). Genetic constraints of population expansion of the Carpathian lynx at the western edge of its native distribution range in Central Europe. Heredity.

2017

Krojerová-Prokešová J, Barančeková M, Kawata Y, Oshida T, Igota H, Koubek P (2017). Genetic differentiation between introduced Central European sika and source populations in Japan: effects of isolation and demographic events. Biological Invasions.
Kutal M, Belotti E, Volfová J, Mináriková T, Bufka L, Poledník L, Krojerová J, Bojda M, Váňa M, Kutalová L, Beneš J, Flousek J, Tomášek V, Kafka P, Poledníková K, Pospíšková J, Dekař P, Machciník B, Koubek P, Duľa M (2017). Occurrence of large carnivores – Lynx lynx, Canis lupus, and Ursus arctos – and of Felis silvestris in the Czech Republic and western Slovakia in 2012–2016 (Carnivora). Lynx.

2015

Krojerová-Prokešová J, Barančeková M, Koubek P (2015). Admixture of Eastern and Western European Red Deer lineages as a result of Postglacial recolonization of the Czech Republic (Central Europe). Journal of Heredity.
Vallo P, Benda P, Červený J, Koubek P (2015). Phylogenetic position of the giant house bat Scotophilus nigrita (Chiroptera, Vespertilionidae). Mammalia.

2013

Vallo P, Benda P, Červený J, Koubek P (2013). Conflicting mitochondrial and nuclear paraphyly in small-sized West African house bats (Vespertilionidae). Zoologica Scripta.
Krojerová-Prokešová J, Barančeková M, Voloshina I, Myslenkov A, Lamka J, Koubek P (2013). Dybowski’s sika deer (Cervus nippon hortulorum): genetic divergence between natural Primorian and introduced Czech populations. Journal of Heredity.
Koubínová D, Irwin N, Hulva P, Koubek P, Zima J (2013). Hidden diversity in Senegalese bats and associated findings in the systematics of the family Vespertilionidae. Frontiers in Zoology.

2012

Barančeková M, Krojerová-Prokešová J, Voloshina IV, Myslenkov AI, Kawata Y, Oshida T, Lamka J, Koubek P (2012). The origin and genetic variability of the Czech sika deer population. Ecological Research.
Najer T, Sychra O, Literák I, Procházka P, Čapek M, Koubek P (2012). Chewing lice (Phthiraptera) from wild birds in Senegal, with descriptions of three new species of the genera Brueelia and Philopteroides. Acta Parasitologica.

2011

Červený J, Begall S, Koubek P, Nováková P, Burda H (2011). Directional preference may enhance hunting accuracy in foraging foxes. Biology Letters.
Kalúz S, Literák I, Čapek M, Konečný A, Koubek P (2011). A new mite species of the genus Lasioseius (Acarina: Gamasina,Blattisociidae) associated with the flowers of Englerina lecardii and Chalcomitra senegalensis (Aves: Nectariniidae) in Senegal. International Journal of Acarology.
Vallo P, Benda P, Martínková N, Kaňuch P, Kalko EKV, Červený J, Koubek P (2011). Morphologically uniform bats Hipposideros aff. ruber (Hipposideridae) exhibit high mitochondrial genetic diversity in southeastern Senegal. Acta Chiropterologica.

2010

Mironov SV, Literák I, Čapek M, Koubek P (2010). New species of the feather mite subfamily Pterodectinae (Astigmata, Proctophyllodidae) from passerines in Senegal. Acta Parasitologica.
Sychra O, Literák I, Najer T, Čapek M, Koubek P, Procházka P (2010). Chewing lice (Insecta: Phthiraptera) from estrildid finches (Aves: Passeriformes: Estrildidae) and louse-flies (Insecta: Diptera: Hippoboscidae) from birds in Senegal, with descriptions of three new species of the genus Brueelia. Zootaxa.
Sychra O, Barlev E, Literák I, Čapek M, Koubek P, Procházka P (2010). The chewing lice (Phthiraptera) of red-billed quelea (Quelea quelea) in Senegal, with a description of a new species. African Entomology.
Koubínová D, Sreepada KS, Koubek P, Zima J (2010). Karyotypic variation in rhinolophid and hipposiderid bats (Chiroptera: Rhinolophidae, Hipposideridae). Acta Chiropterologica.
Mašová Š, Tenora F, Baruš V, Koubek P (2010). A new Anoplocephalid (Cestoda) from Tarentola parvicarinata (Lacertilia: Gekkonidae) in Senegal (West Africa). Journal of Parasitology.
Konečný A, Koubek P, Bryja J (2010). Indications of higher diversity and abundance of small rodents in human-influenced Sudanian savannah than in the Niokolo Koba National Park (Senegal). African Journal of Ecology.
Hartová-Nentvichová M, Šálek M, Červený J, Koubek P (2010). Variation in the diet of the red fox (Vulpes vulpes) in mountain habitats: Effects of altitude and season. Mammalian Biology.

2009

Literák I, Dolejská M, Čížek A, Djigo CAT, Konečný A, Koubek P (2009). Rezervoáry Enterobacteriaceae rezistentních na antibiotika u živočichů sympatrických s člověkem v Senegalu: širokospektrální beta-laktamázy v bakteriích u krysy obecné (Rattus rattus). African Journal of Microbiology Research, 3: 751-754.
Mašová Š, Baruš V, Hodová I, Koubek P, Koubková B (2009). Redescription of Parapharyngodon micipsae (Seurat 1917) (Nematoda Pharyngodonidae) from the new host Tarentola parvicarinata Joger 1980 (Squamata Gekkonidae). Tropical Zoology.
Ryšavá-Nováková M, Koubek P (2009). Složení potravy dvou sympatricky žijících lasicovitých šelem, tchoře tmavého (Mustela putorius) a kuny skalní (Martes foina) v České republice. Folia zoologica.

2008

Vallo P, Guillén-Servent A, Benda P, Pires DB, Koubek P (2008). Variace mitochondriální DNA v komplexu Hipposideros caffer (Chiroptera: Hipposideridae) a její taxonomické implikace. Acta Chiropterologica.
Sreepada KS, Koubínová D, Konečný A, Koubek P, Ráb P, Rábová M, Zima J (2008). Karyotypy tří druhů tadaridovitých netopýrů (Molossidae, Chiroptera) z Indie a západní Afriky. Folia zoologica.
Modrý D, Petrželková KJ, Jirků M, Koubek P (2008). Dva nové druhy rodu Eimeria Schneider, 1875 (Apicomplexa: Eimeriidae) z pískomila Gerbilliscus guineae Thomas (Rodentia: Gerbillinae) z Národního parku Niokolo Koba v Senegalu. Systematic Parasitology.
Mašová Š, Baruš V, Hodová I, Matějusová I, Koubek P, Koubková B (2008). Morfometrická a molekulární charakteristika Parapharyngodon echinatus (Nematoda, Pharyngodonidae) ze senegalského gekona ( Tarentola parvicarinata ). Acta Parasitologica.
Červený J, Koubek P (2008). Čtyři nové druhy netopýrů pro "území České republiky". Vespertilio, 12: 11-14.
Kopečná M, Trčka I, Lamka J, Morávková M, Koubek P, Heroldová M, Mrlík V, Králová A, Pavlík I (2008). Volně žijící živočichové jako hostitelé Mycobacterium avium subsp. paratuberculosis v České republice v letech 2002-2007. Veterinární medicína.

2007

Heroldová M, Homolka M, Kamler J, Koubek P, Forejtek P (2007). Potravní strategie muflona v období lovecké sezony: vztah k potravní nabídce. Acta veterinaria Brno.
Koubek P, Červený J (2007). Šakal obecný (Canis aureus) - nový druh savce v České republice. Lynx.
Pavlačík L, Celer V, Koubek P, Literák I (2007). Prevalence viru psinky u volně žijících lasicovitých a positivní nález u mladé kuny skalní. Veterinární medicína.

2006

Červený J, Anděra M, Koubek P, Bufka L (2006). Changes in distribution of our mammals in the early 21st century. Ochrana přírody, 61: 44-51.
Koubková B, Baruš V, Matějusová I, Hodová I, Koubek P (2006). Thelastoma gueyei sp.n. (Nematoda: Thelastomatidae) ze senegalské mnohonožky Archispirostreptus tumuliporus. Nematology.
Nováková M, Koubek P (2006). Potrava norka amerického (Mustela vison) v České republice (Carnivora: Mustelidae). Lynx.

2004

Koubek P, Baruš V, Koubková B (2004). Nález druhu Skrjabingylus petrowi (Nematoda) ve střední Evropě. Parasitology Research.
Koubek P, Baruš V, Koubková B (2004). Troglotrema acutum (Digenea) u šelem žijících v České republice. Helminthologia.
Anděra M, Červený J, Bufka L, Bartošová D, Koubek P (2004). Recent distribution of the wolf (Canis lupus) in the Czech Republic. Lynx.
Fejklová P, Červený J, Koubek P, Bartošová D, Bufka L (2004). On the diet of the wolf (Canis lupus) in the Czech Republic. Lynx.
Červený J, Bartošová D, Anděra M, Koubek P (2004). Recent distribution of the brown bear (Ursus arctos) in the Czech Republic. Lynx.
Červený J, Koubek P, Bufka L, Kocurová M, Fejklová P (2004). Rys v České republice a jeho šance na přežití. vRoč. 4.

2003

Feuereisel J, Koubek P (2003). Mouflon game in the Czech Republic: dispersal, numbers, current situation and prospects of management. Beiträge zur Jagd- und Wildforschung, 28: 79-83.

2002

Schadt S, Revilla E, Wiegand T, Knauer F, Kaczensky P, Breitenmoser U, Bufka L, Červený J, Koubek P, Huber T, Staniša C, Trepl L (2002). Assessing the suitability of central European landscapes for the reintroduction of Eurasian lynx. Journal of Applied Ecology.
Řehák Z, Koubek P (2002). Mammalia: Carnivora, Lagomorpha & Artiodactyla. Folia Facultatis Scientiarum Naturalium Universitatis Masarykianae Brunensis, 106: 151-160.
Koubková B, Baruš V, Koubek P (2002). Stichorchis subtriquetrus (Digenea: Cladorchidae) - back to the fauna of the Czech Republic after 200 years. Helminthologia.
Okarma H, Dovchanych Y, Findo S, Ionescu O, Koubek P, Szemethy L (2002). Velké šelmy v Karpatech: status, ochrana. Nature conservation, 59: 33-39.
Červený J, Koubek P, Bufka L (2002). Eurasian lynx (Lynx lynx) and its chance for survival in Central Europe: the case of the Czech Republic. Acta zoologica lituanica, 12: 362-366.
Červený J, Fejklová P, Koubek P (2002). On the diet of the brown bear (Ursus arctos) in the Beskydy Mts. (Czech Republic). Lynx.

2001

Červený J, Anděra M, Koubek P, Homolka M, Toman A (2001). Recently expanding mammal species in the Czech Republic: distribution, abundance and legal status. Beiträge zur Jagd- und Wildforschung, 26: 111-125.
Homolka M, Koubek P, Kamler J (2001). Suggestion for new rules in management of ungulates. Folia venatoria.
Horal D, Hort L, Koubek P (2001). New confirmed breedings of the Ural Owl (Strix uralensis) in the Šumava Mts. (Southern Bohemia, Czech Republic). Buteo, 12: 149-150.
Wölfl M, Bufka L, Červený J, Koubek P, Heurich M, Habel H, Huber T, Poost W (2001). Distribution and status of lynx in the border region between Czech Republic, Germany and Austria. Acta Theriologica.
Koubek P, Homolka M, Kamler J (2001). Suggestion for new rules in management of ungulates. Functional Sample.

2000

Červený J, Koubek P (2000). Variability of body and skull dimensions of the lynx (Lynx lynx) in the Czech Republic. Lynx.

1996

Červený J, Koubek P, Anděra M (1996). Population development and recent distribution of the lynx (Lynx lynx) in the Czech Republic. Acta scientiarum naturalium Academiae scientiarum Bohemicae Brno, 30: 2-15.
Koubek P, Červený J (1996). Lynx in the Czech and Slovak Republics. (Appendix). Acta scientiarum naturalium Academiae scientiarum Bohemicae Brno, 30: 1-60.
Koubek P, Hrabě V (1996). Home range dynamics in the red deer (Cervus elaphus) in a mountain forest in Central Europe. Folia zoologica.
Koubek P, Babička C (1996). Lynx (Lynx lynx) in the Hrubý Jeseník Mts. Acta scientiarum naturalium Academiae scientiarum Bohemicae Brno, 30: 39-50.

1995

Koubek P (1995). Velikost domovského okrsku srnce obecného a jeho změny během roku. Folia venatoria.
Koubek P (1995). Home range dynamics and movements of roe deer (Capreolus capreolus) in a floodplain forest. Folia zoologica.

1994

Okulewicz A, Koubek P (1994). Nematoda fauna of some Charadriiformes from Czech republic (Region Brno). Wiadomosci Parazytologiczne, 40: 173-177.

1993

Baruš V, Koubek P (1993). Evidence on the occurence of Onchocerca skrjabini (Nematoda: Onchocercidae) in the Czech Republic. Helminthologia.
Koubek P (1993). Eye-lens Weight as an Indicator of Age in Captive Pheasant Chicks (Phasianus colchicus). Folia zoologica.
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